I'm not sure what you're trying to say. There's only one way the magneto and coil will set in the case. After that you have three wires. Blue, Black and white. It's just blue to blue, black to black and cut off or cap the white wire and never use it for anything. After that all you should have left are the kill switch wires. Just to check, disconnect your kill switch completely, leaving only the black and blue wires connected. BE CAREFULL, this will leave you with no kill switch but should bypass any other problem you may have. Get back to me and let me know how it goes.
Big Red.